AustralieFrV1, Main, Exploration, bibRecord, 007483

The Amphimedon queenslandica genome and the evolution of animal complexity

Identifieur interne : 007483 ( Main/Exploration ); précédent : 007482; suivant : 007484

The Amphimedon queenslandica genome and the evolution of animal complexity

Auteurs : Mansi Srivastava [États-Unis] ; Oleg Simakov [Allemagne] ; Jarrod Chapman [États-Unis] ; Bryony Fahey [Australie] ; Marie E. A. Gauthier [Australie] ; Therese Mitros [États-Unis] ; Gemma S. Richards [Australie] ; Cecilia Conaco [États-Unis] ; Michael Dacre [États-Unis] ; Uffe Hellsten [États-Unis] ; Claire Larroux [Australie] ; Nicholas H. Putnam [États-Unis] ; Mario Stanke [Allemagne] ; Maja Adamska [Australie] ; Aaron Darling [États-Unis] ; Sandie M. Degnan [Australie] ; Todd H. Oakley [États-Unis] ; David C. Plachetzki [États-Unis] ; YUFENG ZHAI [États-Unis] ; Marcin Adamski [Australie] ; Andrew Calcino [Australie] ; Scott F. Cummins [Australie] ; David M. Goodstein [États-Unis] ; Christina Harris [Australie] ; Daniel J. Jackson [Australie] ; Sally P. Leys [Canada] ; SHENGQIANG SHU [États-Unis] ; Ben J. Woodcroft [Australie] ; Michel Vervoort [France] ; Kenneth S. Kosik [États-Unis] ; Gerard Manning [États-Unis] ; Bernard M. Degnan [Australie] ; Daniel S. Rokhsar [États-Unis]

Source :

Nature : (London) [ 0028-0836 ] ; 2010.

RBID : Pascal:10-0390536

Descripteurs français

Pascal (Inist)
- Génome, Organisme benthique, Cycle évolutif, Phylogenèse, Evolution biologique, Complexité, Règne animal, Porifera, Amphimedon queenslandica.

English descriptors

KwdEn :
- Animal kingdom, Benthic organism, Biological evolution, Complexity, Genome, Life history, Phylogeny, Porifera.

Abstract

Sponges are an ancient group of animals that diverged from other metazoans over 600 million years ago. Here we present the draft genome sequence of Amphimedon queenslandica, a demosponge from the Great Barrier Reef, and show that it is remarkably similar to other animal genomes in content, structure and organization. Comparative analysis enabled by the sequencing of the sponge genome reveals genomic events linked to the origin and early evolution of animals, including the appearance, expansion and diversification of pan-metazoan transcription factor, signalling pathway and structural genes. This diverse 'toolkit' of genes correlates with critical aspects of all metazoan body plans, and comprises cell cycle control and growth, development, somatic- and germ-cell specification, cell adhesion, innate immunity and allorecognition. Notably, many of the genes associated with the emergence of animals are also implicated in cancer, which arises from defects in basic processes associated with metazoan multicellularity.

Affiliations:

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<publicationStmt><idno type="wicri:source">INIST</idno>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a">The Amphimedon queenslandica genome and the evolution of animal complexity</title>
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<author><name sortKey="Simakov, Oleg" sort="Simakov, Oleg" uniqKey="Simakov O" first="Oleg" last="Simakov">Oleg Simakov</name>
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<author><name sortKey="Fahey, Bryony" sort="Fahey, Bryony" uniqKey="Fahey B" first="Bryony" last="Fahey">Bryony Fahey</name>
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<author><name sortKey="Gauthier, Marie E A" sort="Gauthier, Marie E A" uniqKey="Gauthier M" first="Marie E. A." last="Gauthier">Marie E. A. Gauthier</name>
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<author><name sortKey="Mitros, Therese" sort="Mitros, Therese" uniqKey="Mitros T" first="Therese" last="Mitros">Therese Mitros</name>
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<author><name sortKey="Dacre, Michael" sort="Dacre, Michael" uniqKey="Dacre M" first="Michael" last="Dacre">Michael Dacre</name>
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<country>États-Unis</country>
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<author><name sortKey="Putnam, Nicholas H" sort="Putnam, Nicholas H" uniqKey="Putnam N" first="Nicholas H." last="Putnam">Nicholas H. Putnam</name>
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<author><name sortKey="Plachetzki, David C" sort="Plachetzki, David C" uniqKey="Plachetzki D" first="David C." last="Plachetzki">David C. Plachetzki</name>
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<author><name sortKey="Yufeng Zhai" sort="Yufeng Zhai" uniqKey="Yufeng Zhai" last="Yufeng Zhai">YUFENG ZHAI</name>
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<author><name sortKey="Goodstein, David M" sort="Goodstein, David M" uniqKey="Goodstein D" first="David M." last="Goodstein">David M. Goodstein</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Department of Energy Joint Genome Institute</s1>
<s2>Walnut Creek, California 94598</s2>
<s3>USA</s3>
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</inist:fA14>
<country>États-Unis</country>
<wicri:noRegion>Department of Energy Joint Genome Institute</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Harris, Christina" sort="Harris, Christina" uniqKey="Harris C" first="Christina" last="Harris">Christina Harris</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>School of Biological Sciences, The University of Queensland</s1>
<s2>Brisbane, Queensland 4072</s2>
<s3>AUS</s3>
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<country>Australie</country>
<wicri:noRegion>Brisbane, Queensland 4072</wicri:noRegion>
</affiliation>
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<author><name sortKey="Jackson, Daniel J" sort="Jackson, Daniel J" uniqKey="Jackson D" first="Daniel J." last="Jackson">Daniel J. Jackson</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>School of Biological Sciences, The University of Queensland</s1>
<s2>Brisbane, Queensland 4072</s2>
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</inist:fA14>
<country>Australie</country>
<wicri:noRegion>Brisbane, Queensland 4072</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Leys, Sally P" sort="Leys, Sally P" uniqKey="Leys S" first="Sally P." last="Leys">Sally P. Leys</name>
<affiliation wicri:level="1"><inist:fA14 i1="11"><s1>Department of Biological Sciences, University of Alberta</s1>
<s2>Edmonton, Alberta T6G 2E9</s2>
<s3>CAN</s3>
<sZ>26 aut.</sZ>
</inist:fA14>
<country>Canada</country>
<wicri:noRegion>Edmonton, Alberta T6G 2E9</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Shengqiang Shu" sort="Shengqiang Shu" uniqKey="Shengqiang Shu" last="Shengqiang Shu">SHENGQIANG SHU</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Department of Energy Joint Genome Institute</s1>
<s2>Walnut Creek, California 94598</s2>
<s3>USA</s3>
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<sZ>23 aut.</sZ>
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<country>États-Unis</country>
<wicri:noRegion>Department of Energy Joint Genome Institute</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Woodcroft, Ben J" sort="Woodcroft, Ben J" uniqKey="Woodcroft B" first="Ben J." last="Woodcroft">Ben J. Woodcroft</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>School of Biological Sciences, The University of Queensland</s1>
<s2>Brisbane, Queensland 4072</s2>
<s3>AUS</s3>
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<country>Australie</country>
<wicri:noRegion>Brisbane, Queensland 4072</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Vervoort, Michel" sort="Vervoort, Michel" uniqKey="Vervoort M" first="Michel" last="Vervoort">Michel Vervoort</name>
<affiliation wicri:level="4"><inist:fA14 i1="12"><s1>Development and Neurobiology program Institut Jacques Monod, UMR 7592 CNRS/Université Paris Diderot-Paris 7</s1>
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<s3>FRA</s3>
<sZ>29 aut.</sZ>
</inist:fA14>
<country>France</country>
<wicri:noRegion>75205 Paris</wicri:noRegion>
<placeName><settlement type="city">Paris</settlement>
<region type="région" nuts="2">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
<orgName type="university">Université Paris Diderot-Paris 7</orgName>
</affiliation>
</author>
<author><name sortKey="Kosik, Kenneth S" sort="Kosik, Kenneth S" uniqKey="Kosik K" first="Kenneth S." last="Kosik">Kenneth S. Kosik</name>
<affiliation wicri:level="4"><inist:fA14 i1="05"><s1>Neuroscience Research Institute, University of California Santa Barbara</s1>
<s2>Santa Barbara, California 93106</s2>
<s3>USA</s3>
<sZ>8 aut.</sZ>
<sZ>30 aut.</sZ>
</inist:fA14>
<country>États-Unis</country>
<placeName><settlement type="city">Santa Barbara (Californie)</settlement>
<region type="state">Californie</region>
</placeName>
<orgName type="university">Université de Californie à Santa Barbara</orgName>
<orgName type="institution">Université de Californie</orgName>
</affiliation>
</author>
<author><name sortKey="Manning, Gerard" sort="Manning, Gerard" uniqKey="Manning G" first="Gerard" last="Manning">Gerard Manning</name>
<affiliation wicri:level="1"><inist:fA14 i1="06"><s1>Razavi Newman Center for Bioinformatics, Salk Institute for Biological Studies</s1>
<s2>La Jolla, California 92037</s2>
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<country>États-Unis</country>
<wicri:noRegion>La Jolla, California 92037</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Degnan, Bernard M" sort="Degnan, Bernard M" uniqKey="Degnan B" first="Bernard M." last="Degnan">Bernard M. Degnan</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>School of Biological Sciences, The University of Queensland</s1>
<s2>Brisbane, Queensland 4072</s2>
<s3>AUS</s3>
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<country>Australie</country>
<wicri:noRegion>Brisbane, Queensland 4072</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Rokhsar, Daniel S" sort="Rokhsar, Daniel S" uniqKey="Rokhsar D" first="Daniel S." last="Rokhsar">Daniel S. Rokhsar</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Center for Integrative Genomics and Department of Molecular and Cell Biology, University of California</s1>
<s2>Berkeley, California 94720</s2>
<s3>USA</s3>
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<country>États-Unis</country>
<wicri:noRegion>Berkeley, California 94720</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Department of Energy Joint Genome Institute</s1>
<s2>Walnut Creek, California 94598</s2>
<s3>USA</s3>
<sZ>3 aut.</sZ>
<sZ>10 aut.</sZ>
<sZ>23 aut.</sZ>
<sZ>27 aut.</sZ>
<sZ>33 aut.</sZ>
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<country>États-Unis</country>
<wicri:noRegion>Department of Energy Joint Genome Institute</wicri:noRegion>
</affiliation>
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</analytic>
<series><title level="j" type="main">Nature : (London)</title>
<title level="j" type="abbreviated">Nature : (Lond.)</title>
<idno type="ISSN">0028-0836</idno>
<imprint><date when="2010">2010</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
<seriesStmt><title level="j" type="main">Nature : (London)</title>
<title level="j" type="abbreviated">Nature : (Lond.)</title>
<idno type="ISSN">0028-0836</idno>
</seriesStmt>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animal kingdom</term>
<term>Benthic organism</term>
<term>Biological evolution</term>
<term>Complexity</term>
<term>Genome</term>
<term>Life history</term>
<term>Phylogeny</term>
<term>Porifera</term>
</keywords>
<keywords scheme="Pascal" xml:lang="fr"><term>Génome</term>
<term>Organisme benthique</term>
<term>Cycle évolutif</term>
<term>Phylogenèse</term>
<term>Evolution biologique</term>
<term>Complexité</term>
<term>Règne animal</term>
<term>Porifera</term>
<term>Amphimedon queenslandica</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Sponges are an ancient group of animals that diverged from other metazoans over 600 million years ago. Here we present the draft genome sequence of Amphimedon queenslandica, a demosponge from the Great Barrier Reef, and show that it is remarkably similar to other animal genomes in content, structure and organization. Comparative analysis enabled by the sequencing of the sponge genome reveals genomic events linked to the origin and early evolution of animals, including the appearance, expansion and diversification of pan-metazoan transcription factor, signalling pathway and structural genes. This diverse 'toolkit' of genes correlates with critical aspects of all metazoan body plans, and comprises cell cycle control and growth, development, somatic- and germ-cell specification, cell adhesion, innate immunity and allorecognition. Notably, many of the genes associated with the emergence of animals are also implicated in cancer, which arises from defects in basic processes associated with metazoan multicellularity.</div>
</front>
</TEI>
<affiliations><list><country><li>Allemagne</li>
<li>Australie</li>
<li>Canada</li>
<li>France</li>
<li>États-Unis</li>
</country>
<region><li>Bade-Wurtemberg</li>
<li>Basse-Saxe</li>
<li>Californie</li>
<li>District de Karlsruhe</li>
<li>Île-de-France</li>
</region>
<settlement><li>Göttingen</li>
<li>Heidelberg</li>
<li>Paris</li>
<li>Santa Barbara (Californie)</li>
</settlement>
<orgName><li>Université Paris Diderot-Paris 7</li>
<li>Université de Californie</li>
<li>Université de Californie à Santa Barbara</li>
</orgName>
</list>
<tree><country name="États-Unis"><noRegion><name sortKey="Srivastava, Mansi" sort="Srivastava, Mansi" uniqKey="Srivastava M" first="Mansi" last="Srivastava">Mansi Srivastava</name>
</noRegion>
<name sortKey="Chapman, Jarrod" sort="Chapman, Jarrod" uniqKey="Chapman J" first="Jarrod" last="Chapman">Jarrod Chapman</name>
<name sortKey="Conaco, Cecilia" sort="Conaco, Cecilia" uniqKey="Conaco C" first="Cecilia" last="Conaco">Cecilia Conaco</name>
<name sortKey="Dacre, Michael" sort="Dacre, Michael" uniqKey="Dacre M" first="Michael" last="Dacre">Michael Dacre</name>
<name sortKey="Darling, Aaron" sort="Darling, Aaron" uniqKey="Darling A" first="Aaron" last="Darling">Aaron Darling</name>
<name sortKey="Goodstein, David M" sort="Goodstein, David M" uniqKey="Goodstein D" first="David M." last="Goodstein">David M. Goodstein</name>
<name sortKey="Hellsten, Uffe" sort="Hellsten, Uffe" uniqKey="Hellsten U" first="Uffe" last="Hellsten">Uffe Hellsten</name>
<name sortKey="Kosik, Kenneth S" sort="Kosik, Kenneth S" uniqKey="Kosik K" first="Kenneth S." last="Kosik">Kenneth S. Kosik</name>
<name sortKey="Manning, Gerard" sort="Manning, Gerard" uniqKey="Manning G" first="Gerard" last="Manning">Gerard Manning</name>
<name sortKey="Mitros, Therese" sort="Mitros, Therese" uniqKey="Mitros T" first="Therese" last="Mitros">Therese Mitros</name>
<name sortKey="Oakley, Todd H" sort="Oakley, Todd H" uniqKey="Oakley T" first="Todd H." last="Oakley">Todd H. Oakley</name>
<name sortKey="Plachetzki, David C" sort="Plachetzki, David C" uniqKey="Plachetzki D" first="David C." last="Plachetzki">David C. Plachetzki</name>
<name sortKey="Putnam, Nicholas H" sort="Putnam, Nicholas H" uniqKey="Putnam N" first="Nicholas H." last="Putnam">Nicholas H. Putnam</name>
<name sortKey="Rokhsar, Daniel S" sort="Rokhsar, Daniel S" uniqKey="Rokhsar D" first="Daniel S." last="Rokhsar">Daniel S. Rokhsar</name>
<name sortKey="Rokhsar, Daniel S" sort="Rokhsar, Daniel S" uniqKey="Rokhsar D" first="Daniel S." last="Rokhsar">Daniel S. Rokhsar</name>
<name sortKey="Shengqiang Shu" sort="Shengqiang Shu" uniqKey="Shengqiang Shu" last="Shengqiang Shu">SHENGQIANG SHU</name>
<name sortKey="Yufeng Zhai" sort="Yufeng Zhai" uniqKey="Yufeng Zhai" last="Yufeng Zhai">YUFENG ZHAI</name>
</country>
<country name="Allemagne"><region name="Bade-Wurtemberg"><name sortKey="Simakov, Oleg" sort="Simakov, Oleg" uniqKey="Simakov O" first="Oleg" last="Simakov">Oleg Simakov</name>
</region>
<name sortKey="Stanke, Mario" sort="Stanke, Mario" uniqKey="Stanke M" first="Mario" last="Stanke">Mario Stanke</name>
</country>
<country name="Australie"><noRegion><name sortKey="Fahey, Bryony" sort="Fahey, Bryony" uniqKey="Fahey B" first="Bryony" last="Fahey">Bryony Fahey</name>
</noRegion>
<name sortKey="Adamska, Maja" sort="Adamska, Maja" uniqKey="Adamska M" first="Maja" last="Adamska">Maja Adamska</name>
<name sortKey="Adamski, Marcin" sort="Adamski, Marcin" uniqKey="Adamski M" first="Marcin" last="Adamski">Marcin Adamski</name>
<name sortKey="Calcino, Andrew" sort="Calcino, Andrew" uniqKey="Calcino A" first="Andrew" last="Calcino">Andrew Calcino</name>
<name sortKey="Cummins, Scott F" sort="Cummins, Scott F" uniqKey="Cummins S" first="Scott F." last="Cummins">Scott F. Cummins</name>
<name sortKey="Degnan, Bernard M" sort="Degnan, Bernard M" uniqKey="Degnan B" first="Bernard M." last="Degnan">Bernard M. Degnan</name>
<name sortKey="Degnan, Sandie M" sort="Degnan, Sandie M" uniqKey="Degnan S" first="Sandie M." last="Degnan">Sandie M. Degnan</name>
<name sortKey="Gauthier, Marie E A" sort="Gauthier, Marie E A" uniqKey="Gauthier M" first="Marie E. A." last="Gauthier">Marie E. A. Gauthier</name>
<name sortKey="Harris, Christina" sort="Harris, Christina" uniqKey="Harris C" first="Christina" last="Harris">Christina Harris</name>
<name sortKey="Jackson, Daniel J" sort="Jackson, Daniel J" uniqKey="Jackson D" first="Daniel J." last="Jackson">Daniel J. Jackson</name>
<name sortKey="Larroux, Claire" sort="Larroux, Claire" uniqKey="Larroux C" first="Claire" last="Larroux">Claire Larroux</name>
<name sortKey="Richards, Gemma S" sort="Richards, Gemma S" uniqKey="Richards G" first="Gemma S." last="Richards">Gemma S. Richards</name>
<name sortKey="Woodcroft, Ben J" sort="Woodcroft, Ben J" uniqKey="Woodcroft B" first="Ben J." last="Woodcroft">Ben J. Woodcroft</name>
</country>
<country name="Canada"><noRegion><name sortKey="Leys, Sally P" sort="Leys, Sally P" uniqKey="Leys S" first="Sally P." last="Leys">Sally P. Leys</name>
</noRegion>
</country>
<country name="France"><region name="Île-de-France"><name sortKey="Vervoort, Michel" sort="Vervoort, Michel" uniqKey="Vervoort M" first="Michel" last="Vervoort">Michel Vervoort</name>
</region>
</country>
</tree>
</affiliations>
</record>

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The Amphimedon queenslandica genome and the evolution of animal complexity

The Amphimedon queenslandica genome and the evolution of animal complexity

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